Publications

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A
Wilkins J., Cannataro V.L., Townsend J.P..  2018.  Analysis of mutation, selection, and epistasis: an informed approach to cancer clinical trials. Oncotarget 9.
Turner PE, Williams ESCP, Okeke C, Cooper VS, Duffy S, Wertz JE.  2014.  Antibiotic resistance correlates with transmission in plasmid evolution.
Cannataro V.L., Gaffney S.G., Sasaki T., Issaeva N., Grewal N.K.S., Grandis J.R., Yarbrough W.G., Burtness B., Anderson K.S., Townsend J.P..  2019.  APOBEC-induced mutations and their cancer effect size in head and neck squamous cell carcinoma. Oncogene 38.
Townsend J.P, Bøhn T., Nielsen K.M..  2012.  Assessing the probability of detection of horizontal gene transfer events in bacterial populations. Frontiers in Microbiology 3(27).
Byars S.G., Stearns S.C., Boomsma J.J..  2018.  Association of long-term risk of respiratory, allergic, and infectious diseases with removal of adenoids and tonsils in childhood. JAMA Otolaryngology – Head and Neck Surgery 144: 594-603.
C
Corbett S., Courtiol A., Lummaaa V, Moorad J., Stearns S.C..  2018.  Chronic disease and the Transition to Modernity: Mismatch and natural selection. Nature Reviews Genetics 19:419-430.
Lewnard J., Townsend J.P..  2016.  Climatic and evolutionary drivers of phase shifts in the plague epidemics of colonial India. Proceedings of the National Academy of the Sciences—USA 113(51).
Dornburg A., , , , , Townsend J.P..  2020.  Comparative genomics within and across Bilaterians illuminates the evolutionary history of ALK and LTK proto-oncogene origination and diversification. Genome Biology and Evolution..
Johannesson H., Townsend J.P., Hung C.-Y., Cole G.T., Taylor J.W..  2005.  Concerted evolution of the repeats of an immunomodulating cell surface protein, SOWgp, of the human pathogenic fungi Coccidioides immitis and C. posadasii. Genetics 171.
Tekle Y.I, Nielsen K.M., Liu J., Pettigrew M.M., Meyers L.A., Galvani A.P., Townsend J.P..  2012.  Controlling antimicrobial resistance through targeted, vaccine-induced replacement of strains. PLOS ONE 7(12).
Stadtmauer D., Wagner G.P.  2020.  Cooperative inflammation: the recruitment of inflammatory signals in marsupial and eutherian pregnancy. Journal of Reproductive Immunology.
D
Nielsen K.M, Bøhn T., Townsend J.P..  2014.  Detecting rare gene transfer events in bacterial populations. Frontiers in Microbiology .
E
Zhao Z., Zhao B., Bai Y., Iamarino A., Gaffney S.G., Schlessinger J., Lifton R.P., Rimm D.L., Townsend J.P..  2016.  Early and multiple genetic origins of metastases within primary tumors. Proceedings of the National Academy of Sciences—USA 113 (8).
Cannataro V.L, Gaffney S.G., Townsend J.P..  2018.  Effect sizes of somatic mutations in cancer. Journal of the National Cancer Institute.
Scarpino S.V, Iamarino A., Wells C., Yamin D., Ndeffo-Mbah M., Wenzel N.S., Fox S.J., Nyenswah T., Altice F.L., Galvani A.P. et al..  2015.  Epidemiological and viral genomic sequence analysis of the 2014 Ebola outbreak reveals clustered transmission. Clinical Infectious Diseases 60(7).
Atkins K.E., Townsend J.P., Medlock J., Galvani A.P..  2013.  Epidemiological mechanisms of genetic resistance to kuru. Journal of the Royal Society – Interface 10(85). .
Wagner G.P, Nnamani M.C, Chavan A.R, Maziarz J., Protopapas S., Condon J., Romero R..  2017.  Evolution of gene expression in the uterine cervix related to steroid signaling: conserved features in the regulation of cervical ripening.
Goldhill DH, Turner PE.  2014.  The evolution of life history trade-offs in viruses .
Kshitiz K, Afzal J, Maziarz JD, Hamidzadeh A, Liang C, Erkenbrack EM, Nam H, Haeger J-D, Pfarrer C, Hoang T et al..  2019.  Evolution or placental invasion and cancer metastasis are causally linked. Nature Ecology & Evolution.
Stearns S.C.  2012.  Evolutionary medicine: Its scope, interest, and potential.
Griffith O.W, Arun C.R, Protopapas S., Maziarz J., Romero R., Wagner G.P.  2017.  The evolutionary origin of eutherian embryo implantation..
Wells J., Nesse R., Sear R., Johnstone R., Stearns S.C.  2017.  Evolutionary public health: Introducing the concept. .
Pavličev M., Zupan A.M, Barry A., Walters S., Milano K.M, Kliman H.J, Wagner G.P.  2019.  An experimental test of the ovulatory homolog model of female orgasm.
Chan BK, Brown K, Kortright KE, Mao. S, Turner. PE.  2016.  Extending the lifetime of antibiotics: how can phage therapy help?
F
Johnsen P.J, Townsend J.P., Bohn T., Simonsen G.S., Sundsfjord A., Nielsen K.M..  2009.  Factors affecting the reversal of antimicrobial resistance. The Lancet Infectious Diseases 9(6).

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