Publications

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Journal Article
Chan BK, Sistrom M, Wertz JE, Kortright KE, Narayan D, Turner. PE.  2016.  Phage selection restores antibiotic sensitivity in MDR Pseudomonas aeruginosa Scientific Reports. volume 6
Journal
Gomez K., Miura S., Hulki L.A., Spell B.S., Townsend J.P., Kumar S..  2018.  Somatic evolutionary timings of driver mutations. BMC Cancer.
Johnsen P.J, Townsend J.P, Bohn T., Simonsen G.S., Sundsfjord A., Nielsen K.M..  2011.  Retrospective evidence for a biological cost of vancomycin resistance in the absence of glycopeptide selective pressures. Journal of Antimicrobial Chemotherapy 66.
Johnsen P.J, Townsend J.P, Bohn T., Simonsen G.S., Sundsfjord A., Nielsen K.M..  2011.  Retrospective evidence for a biological cost of vancomycin resistance in the absence of glycopeptide selective pressures. Journal of Antimicrobial Chemotherapy 66.
Stadtmauer D., Wagner G.P.  2020.  The Primacy of Maternal Innovations to the Evolution of Embryo Implantation. Integrative and Comparative Biology.
Somarelli J.A, Ware K.E., Kostadinov R., Robinson J.M., Amri H., Abu-Asab M., Fourie N., Diogo R., Swofford D., Townsend J.P..  2017.  PhyloOncology: understanding cancer through phylogenetic analysis. Biochimica et Biophysica Acta (BBA)—Reviews on Cancer 1867 (2).
Somarelli J.A, Ware K.E., Kostadinov R., Robinson J.M., Amri H., Abu-Asab M., Fourie N., Diogo R., Swofford D., Townsend J.P..  2017.  PhyloOncology: understanding cancer through phylogenetic analysis. Biochimica et Biophysica Acta (BBA)—Reviews on Cancer 1867 (2).
Johannesson H., Kasuga T., Schaller R.A., Good B., Gardner M.J., Townsend J.P., Cole G.T., Taylor J.W..  2006.  Phase-specific gene expression underlying morphological adaptations of the dimorphic human pathogenic fungus, Coccidioides posadasii. Fungal Genetics and Biology 43(8).
Somarelli J.A, Gardner H., Cannataro V.L., Gunady E.F., Boddy A.M., Johnson N.A., Fisk J.N., Gaffney S.G., , Li S. et al..  2020.  Molecular biology and evolution of cancer: from discovery to action. Molecular Biology and Evolution.
Hong W.S, Shpak M., Townsend J.P..  2015.   Inferring the origin of metastases from cancer phylogenies. Cancer Research 75(19).
Cannataro V.L., Gaffney S.G., Stender C., Zhao Z.-M., Philips M., Greenstein A., Townsend J.P..  2018.  Heterogeneity and mutation in KRAS and associated oncogenes: evaluating the potential for evolution of resistance to targeting of KRAS G12C. Oncogene..
Byars S.G., Huang Q.Q., Gray L-A., Bakshi A., Ripatti S., Abraham G., Stearns S.C., Inouye M.  2017.  Genetic loci associated with coronary artery disease harbor evidence of selection and antagonistic pleiotropy. PLOS Genetics.
Stearns S.C.  2020.  Frontiers in molecular evolutionary medicine. J. Mol. Evol. .
Johnsen P.J, Townsend J.P., Bohn T., Simonsen G.S., Sundsfjord A., Nielsen K.M..  2009.  Factors affecting the reversal of antimicrobial resistance. The Lancet Infectious Diseases 9(6).
Johnsen P.J, Townsend J.P., Bohn T., Simonsen G.S., Sundsfjord A., Nielsen K.M..  2009.  Factors affecting the reversal of antimicrobial resistance. The Lancet Infectious Diseases 9(6).
Wells J., Nesse R., Sear R., Johnstone R., Stearns S.C.  2017.  Evolutionary public health: Introducing the concept. .
Wells J., Nesse R., Sear R., Johnstone R., Stearns S.C.  2017.  Evolutionary public health: Introducing the concept. .
Stearns S.C.  2012.  Evolutionary medicine: Its scope, interest, and potential.
Kshitiz K, Afzal J, Maziarz JD, Hamidzadeh A, Liang C, Erkenbrack EM, Nam H, Haeger J-D, Pfarrer C, Hoang T et al..  2019.  Evolution or placental invasion and cancer metastasis are causally linked. Nature Ecology & Evolution.
Scarpino S.V, Iamarino A., Wells C., Yamin D., Ndeffo-Mbah M., Wenzel N.S., Fox S.J., Nyenswah T., Altice F.L., Galvani A.P. et al..  2015.  Epidemiological and viral genomic sequence analysis of the 2014 Ebola outbreak reveals clustered transmission. Clinical Infectious Diseases 60(7).
Zhao Z., Zhao B., Bai Y., Iamarino A., Gaffney S.G., Schlessinger J., Lifton R.P., Rimm D.L., Townsend J.P..  2016.  Early and multiple genetic origins of metastases within primary tumors. Proceedings of the National Academy of Sciences—USA 113 (8).
Stadtmauer D., Wagner G.P.  2020.  Cooperative inflammation: the recruitment of inflammatory signals in marsupial and eutherian pregnancy. Journal of Reproductive Immunology.
Corbett S., Courtiol A., Lummaaa V, Moorad J., Stearns S.C..  2018.  Chronic disease and the Transition to Modernity: Mismatch and natural selection. Nature Reviews Genetics 19:419-430.
Byars S.G., Stearns S.C., Boomsma J.J..  2018.  Association of long-term risk of respiratory, allergic, and infectious diseases with removal of adenoids and tonsils in childhood. JAMA Otolaryngology – Head and Neck Surgery 144: 594-603.
Cannataro V.L., Gaffney S.G., Sasaki T., Issaeva N., Grewal N.K.S., Grandis J.R., Yarbrough W.G., Burtness B., Anderson K.S., Townsend J.P..  2019.  APOBEC-induced mutations and their cancer effect size in head and neck squamous cell carcinoma. Oncogene 38.