Publications

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Zhao Z., Zhao B., Bai Y., Iamarino A., Gaffney S.G., Schlessinger J., Lifton R.P., Rimm D.L., Townsend J.P..  2016.  Early and multiple genetic origins of metastases within primary tumors. Proceedings of the National Academy of Sciences—USA 113 (8).
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Wilkins J., Cannataro V.L., Townsend J.P..  2018.  Analysis of mutation, selection, and epistasis: an informed approach to cancer clinical trials. Oncotarget 9.
Wells J., Nesse R., Sear R., Johnstone R., Stearns S.C.  2017.  Evolutionary public health: Introducing the concept. .
Wagner G.P, Nnamani M.C, Chavan A.R, Maziarz J., Protopapas S., Condon J., Romero R..  2017.  Evolution of gene expression in the uterine cervix related to steroid signaling: conserved features in the regulation of cervical ripening.
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Turner PE, Williams ESCP, Okeke C, Cooper VS, Duffy S, Wertz JE.  2014.  Antibiotic resistance correlates with transmission in plasmid evolution.
Townsend J.P, Bøhn T., Nielsen K.M..  2012.  Assessing the probability of detection of horizontal gene transfer events in bacterial populations. Frontiers in Microbiology 3(27).
Tekle Y.I, Nielsen K.M., Liu J., Pettigrew M.M., Meyers L.A., Galvani A.P., Townsend J.P..  2012.  Controlling antimicrobial resistance through targeted, vaccine-induced replacement of strains. PLOS ONE 7(12).
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Stearns S.C.  2012.  Evolutionary medicine: Its scope, interest, and potential.
Stearns S.C.  2020.  Frontiers in molecular evolutionary medicine. J. Mol. Evol. .
Stadtmauer D., Wagner G.P.  2020.  The Primacy of Maternal Innovations to the Evolution of Embryo Implantation. Integrative and Comparative Biology.
Stadtmauer D., Wagner G.P.  2020.  Cooperative inflammation: the recruitment of inflammatory signals in marsupial and eutherian pregnancy. Journal of Reproductive Immunology.
Somarelli J.A, Gardner H., Cannataro V.L., Gunady E.F., Boddy A.M., Johnson N.A., Fisk J.N., Gaffney S.G., , Li S. et al..  2020.  Molecular biology and evolution of cancer: from discovery to action. Molecular Biology and Evolution.
Somarelli J.A, Ware K.E., Kostadinov R., Robinson J.M., Amri H., Abu-Asab M., Fourie N., Diogo R., Swofford D., Townsend J.P..  2017.  PhyloOncology: understanding cancer through phylogenetic analysis. Biochimica et Biophysica Acta (BBA)—Reviews on Cancer 1867 (2).
Scarpino S.V, Iamarino A., Wells C., Yamin D., Ndeffo-Mbah M., Wenzel N.S., Fox S.J., Nyenswah T., Altice F.L., Galvani A.P. et al..  2015.  Epidemiological and viral genomic sequence analysis of the 2014 Ebola outbreak reveals clustered transmission. Clinical Infectious Diseases 60(7).
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Qing T., Mohsen H., Marczyk M., Ye Y., O'Meara T., Zhao H., Townsend J.P., Gerstein M., Hatzis C., Kluger Y. et al..  2020.  Germline variant burden in cancer genes correlates with age at diagnosis and somatic mutation burden. Nature communications.
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Pavličev M., Zupan A.M, Barry A., Walters S., Milano K.M, Kliman H.J, Wagner G.P.  2019.  An experimental test of the ovulatory homolog model of female orgasm.
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Nielsen K.M, Bøhn T., Townsend J.P..  2014.  Detecting rare gene transfer events in bacterial populations. Frontiers in Microbiology .
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Lewnard J., Townsend J.P..  2016.  Climatic and evolutionary drivers of phase shifts in the plague epidemics of colonial India. Proceedings of the National Academy of the Sciences—USA 113(51).
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Kshitiz K, Afzal J, Maziarz JD, Hamidzadeh A, Liang C, Erkenbrack EM, Nam H, Haeger J-D, Pfarrer C, Hoang T et al..  2019.  Evolution or placental invasion and cancer metastasis are causally linked. Nature Ecology & Evolution.
Kortright KE, Chan BK, Koff JL, Turner PE.  2019.   Phage therapy: a renewed approach to combat antibiotic-resistant bacteria .
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Johnsen P.J, Townsend J.P., Bohn T., Simonsen G.S., Sundsfjord A., Nielsen K.M..  2009.  Factors affecting the reversal of antimicrobial resistance. The Lancet Infectious Diseases 9(6).
Johnsen P.J, Townsend J.P, Bohn T., Simonsen G.S., Sundsfjord A., Nielsen K.M..  2011.  Retrospective evidence for a biological cost of vancomycin resistance in the absence of glycopeptide selective pressures. Journal of Antimicrobial Chemotherapy 66.
Johannesson H., Townsend J.P., Hung C.-Y., Cole G.T., Taylor J.W..  2005.  Concerted evolution of the repeats of an immunomodulating cell surface protein, SOWgp, of the human pathogenic fungi Coccidioides immitis and C. posadasii. Genetics 171.
Johannesson H., Kasuga T., Schaller R.A., Good B., Gardner M.J., Townsend J.P., Cole G.T., Taylor J.W..  2006.  Phase-specific gene expression underlying morphological adaptations of the dimorphic human pathogenic fungus, Coccidioides posadasii. Fungal Genetics and Biology 43(8).
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Hong W.S, Shpak M., Townsend J.P..  2015.   Inferring the origin of metastases from cancer phylogenies. Cancer Research 75(19).

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