Publications

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A
Cannataro V.L., Gaffney S.G., Sasaki T., Issaeva N., Grewal N.K.S., Grandis J.R., Yarbrough W.G., Burtness B., Anderson K.S., Townsend J.P..  2019.  APOBEC-induced mutations and their cancer effect size in head and neck squamous cell carcinoma. Oncogene 38.
Cannataro V.L., Gaffney S.G., Sasaki T., Issaeva N., Grewal N.K.S., Grandis J.R., Yarbrough W.G., Burtness B., Anderson K.S., Townsend J.P..  2019.  APOBEC-induced mutations and their cancer effect size in head and neck squamous cell carcinoma. Oncogene 38.
Cannataro V.L., Gaffney S.G., Sasaki T., Issaeva N., Grewal N.K.S., Grandis J.R., Yarbrough W.G., Burtness B., Anderson K.S., Townsend J.P..  2019.  APOBEC-induced mutations and their cancer effect size in head and neck squamous cell carcinoma. Oncogene 38.
C
Tekle Y.I, Nielsen K.M., Liu J., Pettigrew M.M., Meyers L.A., Galvani A.P., Townsend J.P..  2012.  Controlling antimicrobial resistance through targeted, vaccine-induced replacement of strains. PLOS ONE 7(12).
E
Zhao Z., Zhao B., Bai Y., Iamarino A., Gaffney S.G., Schlessinger J., Lifton R.P., Rimm D.L., Townsend J.P..  2016.  Early and multiple genetic origins of metastases within primary tumors. Proceedings of the National Academy of Sciences—USA 113 (8).
Cannataro V.L, Gaffney S.G., Townsend J.P..  2018.  Effect sizes of somatic mutations in cancer. Journal of the National Cancer Institute.
Scarpino S.V, Iamarino A., Wells C., Yamin D., Ndeffo-Mbah M., Wenzel N.S., Fox S.J., Nyenswah T., Altice F.L., Galvani A.P. et al..  2015.  Epidemiological and viral genomic sequence analysis of the 2014 Ebola outbreak reveals clustered transmission. Clinical Infectious Diseases 60(7).
Atkins K.E., Townsend J.P., Medlock J., Galvani A.P..  2013.  Epidemiological mechanisms of genetic resistance to kuru. Journal of the Royal Society – Interface 10(85). .
Goldhill DH, Turner PE.  2014.  The evolution of life history trade-offs in viruses .
Griffith O.W, Arun C.R, Protopapas S., Maziarz J., Romero R., Wagner G.P.  2017.  The evolutionary origin of eutherian embryo implantation..
G
Byars S.G., Huang Q.Q., Gray L-A., Bakshi A., Ripatti S., Abraham G., Stearns S.C., Inouye M.  2017.  Genetic loci associated with coronary artery disease harbor evidence of selection and antagonistic pleiotropy. PLOS Genetics.
Qing T., Mohsen H., Marczyk M., Ye Y., O'Meara T., Zhao H., Townsend J.P., Gerstein M., Hatzis C., Kluger Y. et al..  2020.  Germline variant burden in cancer genes correlates with age at diagnosis and somatic mutation burden. Nature communications.
H
Cannataro V.L., Gaffney S.G., Stender C., Zhao Z.-M., Philips M., Greenstein A., Townsend J.P..  2018.  Heterogeneity and mutation in KRAS and associated oncogenes: evaluating the potential for evolution of resistance to targeting of KRAS G12C. Oncogene..
Cannataro V.L., Gaffney S.G., Stender C., Zhao Z.-M., Philips M., Greenstein A., Townsend J.P..  2018.  Heterogeneity and mutation in KRAS and associated oncogenes: evaluating the potential for evolution of resistance to targeting of KRAS G12C. Oncogene..
I
Chavan A., Griffith O., Wagner G.P.  2017.  The inflammation paradox in the evolution of mammalian pregnancy: turning a foe into a friend. Curr. Opinions in Genetics and Development.
M
Erkenbrack E.M, Maziarz J.D, Griffith O.W, Liang C., Chavan A.R, Nnamani M.C, Wagner G.P.  2018.  "The mammalian decidual cell evolved from a cellular stress response.".
Somarelli J.A, Gardner H., Cannataro V.L., Gunady E.F., Boddy A.M., Johnson N.A., Fisk J.N., Gaffney S.G., , Li S. et al..  2020.  Molecular biology and evolution of cancer: from discovery to action. Molecular Biology and Evolution.
Somarelli J.A, Gardner H., Cannataro V.L., Gunady E.F., Boddy A.M., Johnson N.A., Fisk J.N., Gaffney S.G., , Li S. et al..  2020.  Molecular biology and evolution of cancer: from discovery to action. Molecular Biology and Evolution.
Somarelli J.A, Gardner H., Cannataro V.L., Gunady E.F., Boddy A.M., Johnson N.A., Fisk J.N., Gaffney S.G., , Li S. et al..  2020.  Molecular biology and evolution of cancer: from discovery to action. Molecular Biology and Evolution.
P
Johannesson H., Kasuga T., Schaller R.A., Good B., Gardner M.J., Townsend J.P., Cole G.T., Taylor J.W..  2006.  Phase-specific gene expression underlying morphological adaptations of the dimorphic human pathogenic fungus, Coccidioides posadasii. Fungal Genetics and Biology 43(8).
Johannesson H., Kasuga T., Schaller R.A., Good B., Gardner M.J., Townsend J.P., Cole G.T., Taylor J.W..  2006.  Phase-specific gene expression underlying morphological adaptations of the dimorphic human pathogenic fungus, Coccidioides posadasii. Fungal Genetics and Biology 43(8).
Burmeister AR, Fortier A, Roush C, Lessing AJ, Bender RG, Barahman R, Grant R, Chan BK, Turner PE.  2020.  Pleiotropy complicates a trade-off between phage resistance and antibiotic resistance. Proceedings of the National Academy of Sciences .
S
Gomez K., Miura S., Hulki L.A., Spell B.S., Townsend J.P., Kumar S..  2018.  Somatic evolutionary timings of driver mutations. BMC Cancer.