Publications

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2005
Johannesson H., Townsend J.P., Hung C.-Y., Cole G.T., Taylor J.W..  2005.  Concerted evolution of the repeats of an immunomodulating cell surface protein, SOWgp, of the human pathogenic fungi Coccidioides immitis and C. posadasii. Genetics 171.
2006
Johannesson H., Kasuga T., Schaller R.A., Good B., Gardner M.J., Townsend J.P., Cole G.T., Taylor J.W..  2006.  Phase-specific gene expression underlying morphological adaptations of the dimorphic human pathogenic fungus, Coccidioides posadasii. Fungal Genetics and Biology 43(8).
2009
Johnsen P.J, Townsend J.P., Bohn T., Simonsen G.S., Sundsfjord A., Nielsen K.M..  2009.  Factors affecting the reversal of antimicrobial resistance. The Lancet Infectious Diseases 9(6).
2011
Johnsen P.J, Townsend J.P, Bohn T., Simonsen G.S., Sundsfjord A., Nielsen K.M..  2011.  Retrospective evidence for a biological cost of vancomycin resistance in the absence of glycopeptide selective pressures. Journal of Antimicrobial Chemotherapy 66.
2012
Townsend J.P, Bøhn T., Nielsen K.M..  2012.  Assessing the probability of detection of horizontal gene transfer events in bacterial populations. Frontiers in Microbiology 3(27).
Tekle Y.I, Nielsen K.M., Liu J., Pettigrew M.M., Meyers L.A., Galvani A.P., Townsend J.P..  2012.  Controlling antimicrobial resistance through targeted, vaccine-induced replacement of strains. PLOS ONE 7(12).
Stearns S.C.  2012.  Evolutionary medicine: Its scope, interest, and potential.
2013
Atkins K.E., Townsend J.P., Medlock J., Galvani A.P..  2013.  Epidemiological mechanisms of genetic resistance to kuru. Journal of the Royal Society – Interface 10(85). .
2014
Turner PE, Williams ESCP, Okeke C, Cooper VS, Duffy S, Wertz JE.  2014.  Antibiotic resistance correlates with transmission in plasmid evolution.
Nielsen K.M, Bøhn T., Townsend J.P..  2014.  Detecting rare gene transfer events in bacterial populations. Frontiers in Microbiology .
Goldhill DH, Turner PE.  2014.  The evolution of life history trade-offs in viruses .
2015
Scarpino S.V, Iamarino A., Wells C., Yamin D., Ndeffo-Mbah M., Wenzel N.S., Fox S.J., Nyenswah T., Altice F.L., Galvani A.P. et al..  2015.  Epidemiological and viral genomic sequence analysis of the 2014 Ebola outbreak reveals clustered transmission. Clinical Infectious Diseases 60(7).
Hong W.S, Shpak M., Townsend J.P..  2015.   Inferring the origin of metastases from cancer phylogenies. Cancer Research 75(19).
2016
Lewnard J., Townsend J.P..  2016.  Climatic and evolutionary drivers of phase shifts in the plague epidemics of colonial India. Proceedings of the National Academy of the Sciences—USA 113(51).
Zhao Z., Zhao B., Bai Y., Iamarino A., Gaffney S.G., Schlessinger J., Lifton R.P., Rimm D.L., Townsend J.P..  2016.  Early and multiple genetic origins of metastases within primary tumors. Proceedings of the National Academy of Sciences—USA 113 (8).
Chan BK, Brown K, Kortright KE, Mao. S, Turner. PE.  2016.  Extending the lifetime of antibiotics: how can phage therapy help?
Chan BK, Sistrom M, Wertz JE, Kortright KE, Narayan D, Turner. PE.  2016.  Phage selection restores antibiotic sensitivity in MDR Pseudomonas aeruginosa Scientific Reports. volume 6
2017
Wagner G.P, Nnamani M.C, Chavan A.R, Maziarz J., Protopapas S., Condon J., Romero R..  2017.  Evolution of gene expression in the uterine cervix related to steroid signaling: conserved features in the regulation of cervical ripening.
Griffith O.W, Arun C.R, Protopapas S., Maziarz J., Romero R., Wagner G.P.  2017.  The evolutionary origin of eutherian embryo implantation..
Wells J., Nesse R., Sear R., Johnstone R., Stearns S.C.  2017.  Evolutionary public health: Introducing the concept. .
Byars S.G., Huang Q.Q., Gray L-A., Bakshi A., Ripatti S., Abraham G., Stearns S.C., Inouye M.  2017.  Genetic loci associated with coronary artery disease harbor evidence of selection and antagonistic pleiotropy. PLOS Genetics.
Chavan A., Griffith O., Wagner G.P.  2017.  The inflammation paradox in the evolution of mammalian pregnancy: turning a foe into a friend. Curr. Opinions in Genetics and Development.
Somarelli J.A, Ware K.E., Kostadinov R., Robinson J.M., Amri H., Abu-Asab M., Fourie N., Diogo R., Swofford D., Townsend J.P..  2017.  PhyloOncology: understanding cancer through phylogenetic analysis. Biochimica et Biophysica Acta (BBA)—Reviews on Cancer 1867 (2).
2018
Wilkins J., Cannataro V.L., Townsend J.P..  2018.  Analysis of mutation, selection, and epistasis: an informed approach to cancer clinical trials. Oncotarget 9.
Byars S.G., Stearns S.C., Boomsma J.J..  2018.  Association of long-term risk of respiratory, allergic, and infectious diseases with removal of adenoids and tonsils in childhood. JAMA Otolaryngology – Head and Neck Surgery 144: 594-603.

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