Publications

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2005
Johannesson H., Townsend J.P., Hung C.-Y., Cole G.T., Taylor J.W..  2005.  Concerted evolution of the repeats of an immunomodulating cell surface protein, SOWgp, of the human pathogenic fungi Coccidioides immitis and C. posadasii. Genetics 171.
Johannesson H., Townsend J.P., Hung C.-Y., Cole G.T., Taylor J.W..  2005.  Concerted evolution of the repeats of an immunomodulating cell surface protein, SOWgp, of the human pathogenic fungi Coccidioides immitis and C. posadasii. Genetics 171.
2006
Johannesson H., Kasuga T., Schaller R.A., Good B., Gardner M.J., Townsend J.P., Cole G.T., Taylor J.W..  2006.  Phase-specific gene expression underlying morphological adaptations of the dimorphic human pathogenic fungus, Coccidioides posadasii. Fungal Genetics and Biology 43(8).
Johannesson H., Kasuga T., Schaller R.A., Good B., Gardner M.J., Townsend J.P., Cole G.T., Taylor J.W..  2006.  Phase-specific gene expression underlying morphological adaptations of the dimorphic human pathogenic fungus, Coccidioides posadasii. Fungal Genetics and Biology 43(8).
2009
Johnsen P.J, Townsend J.P., Bohn T., Simonsen G.S., Sundsfjord A., Nielsen K.M..  2009.  Factors affecting the reversal of antimicrobial resistance. The Lancet Infectious Diseases 9(6).
2011
Johnsen P.J, Townsend J.P, Bohn T., Simonsen G.S., Sundsfjord A., Nielsen K.M..  2011.  Retrospective evidence for a biological cost of vancomycin resistance in the absence of glycopeptide selective pressures. Journal of Antimicrobial Chemotherapy 66.
2012
Townsend J.P, Bøhn T., Nielsen K.M..  2012.  Assessing the probability of detection of horizontal gene transfer events in bacterial populations. Frontiers in Microbiology 3(27).
Tekle Y.I, Nielsen K.M., Liu J., Pettigrew M.M., Meyers L.A., Galvani A.P., Townsend J.P..  2012.  Controlling antimicrobial resistance through targeted, vaccine-induced replacement of strains. PLOS ONE 7(12).
Tekle Y.I, Nielsen K.M., Liu J., Pettigrew M.M., Meyers L.A., Galvani A.P., Townsend J.P..  2012.  Controlling antimicrobial resistance through targeted, vaccine-induced replacement of strains. PLOS ONE 7(12).
2013
Atkins K.E., Townsend J.P., Medlock J., Galvani A.P..  2013.  Epidemiological mechanisms of genetic resistance to kuru. Journal of the Royal Society – Interface 10(85). .
2014
Turner PE, Williams ESCP, Okeke C, Cooper VS, Duffy S, Wertz JE.  2014.  Antibiotic resistance correlates with transmission in plasmid evolution.
Nielsen K.M, Bøhn T., Townsend J.P..  2014.  Detecting rare gene transfer events in bacterial populations. Frontiers in Microbiology .
Goldhill DH, Turner PE.  2014.  The evolution of life history trade-offs in viruses .
2015
Hong W.S, Shpak M., Townsend J.P..  2015.   Inferring the origin of metastases from cancer phylogenies. Cancer Research 75(19).
2016
Lewnard J., Townsend J.P..  2016.  Climatic and evolutionary drivers of phase shifts in the plague epidemics of colonial India. Proceedings of the National Academy of the Sciences—USA 113(51).
Zhao Z., Zhao B., Bai Y., Iamarino A., Gaffney S.G., Schlessinger J., Lifton R.P., Rimm D.L., Townsend J.P..  2016.  Early and multiple genetic origins of metastases within primary tumors. Proceedings of the National Academy of Sciences—USA 113 (8).
Chan BK, Brown K, Kortright KE, Mao. S, Turner. PE.  2016.  Extending the lifetime of antibiotics: how can phage therapy help?
Chan BK, Sistrom M, Wertz JE, Kortright KE, Narayan D, Turner. PE.  2016.  Phage selection restores antibiotic sensitivity in MDR Pseudomonas aeruginosa Scientific Reports. volume 6
2017
Somarelli J.A, Ware K.E., Kostadinov R., Robinson J.M., Amri H., Abu-Asab M., Fourie N., Diogo R., Swofford D., Townsend J.P..  2017.  PhyloOncology: understanding cancer through phylogenetic analysis. Biochimica et Biophysica Acta (BBA)—Reviews on Cancer 1867 (2).
2018
Wilkins J., Cannataro V.L., Townsend J.P..  2018.  Analysis of mutation, selection, and epistasis: an informed approach to cancer clinical trials. Oncotarget 9.
Cannataro V.L, Gaffney S.G., Townsend J.P..  2018.  Effect sizes of somatic mutations in cancer. Journal of the National Cancer Institute.
Cannataro V.L., Gaffney S.G., Stender C., Zhao Z.-M., Philips M., Greenstein A., Townsend J.P..  2018.  Heterogeneity and mutation in KRAS and associated oncogenes: evaluating the potential for evolution of resistance to targeting of KRAS G12C. Oncogene..
Cannataro V.L., Townsend J.P..  2018.  Neutral theory and the somatic evolution of cancer. Molecular Biology and Evolution.
Chan BK, Turner PE, Kim S, Mojibian HR, Elefteriades JA, Narayan D.  2018.  Phage treatment of an aortic graft infected with Pseudomonas aeruginosa.
Gomez K., Miura S., Hulki L.A., Spell B.S., Townsend J.P., Kumar S..  2018.  Somatic evolutionary timings of driver mutations. BMC Cancer.

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